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expectmine 0.0.1 documentation

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expectmine 0.0.1 documentation

Pipeline

Overview
Goals & Non-Goals
🚧Todo

Getting started

Setup
Commands
Your first pipeline
Troubleshooting

Guides

Repo structure
How to write a custom step
How to write a custom adapter
Other modes

Concepts

Pipeline Module
Toggle navigation of Pipeline Module
- Pipeline Class
- Pipeline Helper Functions
Steps Module
Toggle navigation of Steps Module
- Base Step Class
- Steps Helper Functions
- MZmine3
  Toggle navigation of MZmine3
  - MZmine3 Class
- Sirius Fingerprint
  Toggle navigation of Sirius Fingerprint
  - Sirius Fingerprint Class
- Shrink-Mgf
  Toggle navigation of Shrink-Mgf
  - Shrink-Mgf Class
IO Module
Toggle navigation of IO Module
- IO Base Class
- IO Base Adapter Class
- IO Helper Functions
- Cli IO
  Toggle navigation of Cli IO
  - Cli IO Class
  - Cli IO Adapter Class
- Dict IO
  Toggle navigation of Dict IO
  - Dict IO Class
  - Dict IO Adapter Class
Store Module
Toggle navigation of Store Module
- Store Base Class
- Store Base Adapter Class
- Store Helper Functions
- In Memory
  Toggle navigation of In Memory
  - In Memory Class
  - In Memory Adapter Class
- Sqlite3
  Toggle navigation of Sqlite3
  - Sqlite3 Class
  - Sqlite3 Adapter Class
Logger Module
Toggle navigation of Logger Module
- Logger Base Class
- Logger Base Adapter Class
- Logger Helper Functions
- Cli logger
  Toggle navigation of Cli logger
  - Cli Logger Class
  - Cli Logger Adapter Class
Utils Modules
Toggle navigation of Utils Modules
- Cmd Module
- Github Module

Quick Links

Sirius
Sirius CLI Help
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MZmine3

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Pipeline Class#

Pipeline Helper Functions

Pipeline Module

Copyright © 2023, Marc Padrutt

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