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expectmine 0.0.1 documentation
expectmine 0.0.1 documentation

Pipeline

  • Overview
  • Goals & Non-Goals
  • 🚧Todo

Getting started

  • Setup
  • Commands
  • Your first pipeline
  • Troubleshooting

Guides

  • Repo structure
  • How to write a custom step
  • How to write a custom adapter
  • Other modes

Concepts

  • Pipeline Module
    • Pipeline Class
    • Pipeline Helper Functions
  • Steps Module
    • Base Step Class
    • Steps Helper Functions
    • MZmine3
      • MZmine3 Class
    • Sirius Fingerprint
      • Sirius Fingerprint Class
    • Shrink-Mgf
      • Shrink-Mgf Class
  • IO Module
    • IO Base Class
    • IO Base Adapter Class
    • IO Helper Functions
    • Cli IO
      • Cli IO Class
      • Cli IO Adapter Class
    • Dict IO
      • Dict IO Class
      • Dict IO Adapter Class
  • Store Module
    • Store Base Class
    • Store Base Adapter Class
    • Store Helper Functions
    • In Memory
      • In Memory Class
      • In Memory Adapter Class
    • Sqlite3
      • Sqlite3 Class
      • Sqlite3 Adapter Class
  • Logger Module
    • Logger Base Class
    • Logger Base Adapter Class
    • Logger Helper Functions
    • Cli logger
      • Cli Logger Class
      • Cli Logger Adapter Class
  • Utils Modules
    • Cmd Module
    • Github Module

Quick Links

  • Sirius
  • Sirius CLI Help
    • Sirius CLI Login
    • Sirius formula identification
    • Sirius structure search
    • Sirius CSI:FingerID
    • Sirius Export
  • MZmine3
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Copyright © 2023, Marc Padrutt
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